Tools / Utilities / Transformation

fu-shred

Utility wrapperdeprecated

Deprecated launcher that forwards its arguments to seqfu shred.

Invocation

fu-shred

Input

FASTA, FASTQ

Output

FASTQ or FASTA

Paired-end

—

Deprecated. Use seqfu shred instead; this program is kept only so existing pipelines keep working.

The fu-shred binary is deprecated: it forwards all of its arguments to seqfu shred, which is the preferred command.

# Legacy
fu-shred -l 150 -s 50 genome.fa > reads.fq

# Preferred
seqfu shred -l 150 -s 50 genome.fa > reads.fq

Since SeqFu 1.30 the fu-readtope script has also been replaced, by seqfu shred --amplicon.