fu-orf

fu-orf is a compatibility wrapper for seqfu orf.

Preferred command:

seqfu orf [options] <InputFile>
seqfu orf [options] -1 File_R1.fq
seqfu orf [options] -1 File_R1.fq -2 File_R2.fq

Legacy equivalent:

fu-orf [options] <InputFile>
fu-orf [options] -1 File_R1.fq
fu-orf [options] -1 File_R1.fq -2 File_R2.fq

Both commands share the same behavior and options, including:

ORF extraction parameters (--min-size, --scan-reverse, --code, --translate)
Paired-end joining controls (--join, --min-overlap, --max-overlap, --min-identity)
batching controls (--pool-size, --in-flight-batches)

See also