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Metabarcoding workshop (day 2)

Yesterday we introduced the whole workflow to analyze 16S reads, and the powerful framework that Qiime2 introduced that:

A primer on Dadaist2

What is Dadaist2

Singularity for bioinformatics

A basic introduction to Singularity containers

Bash script getting parameters from the users

A basic introduction on passing parameters to shell scripts

Bash script safety net

We can instruct our scripts to stop when a problem is found with the set -euo pipefail directive.