2. Re-estimate kraken2 species abundances using bracken
An introduction to the “Tidyverse”
Today we will use Braken to recalibrate our estimations, and a set of scripts to merge multiple samples in a single table, and see how to filter it. We will...
On our first day we well cover the concepts behind taxonomic classification using Kraken2 (and Bracken), and see how to remove host reads and perform the quality checks (and filtering)....
From the Command line to R
Yesterday we introduced the whole workflow to analyze 16S reads, and the powerful framework that Qiime2