When performing multiple operations on the same dataset, as some of you pointed out during the workshop, we often want to collate metadata. R is the ideal choice for doing...
Today we will use Braken to recalibrate our estimations, and a set of scripts to merge multiple samples in a single table, and see how to filter it. We will...
On our first day we well cover the concepts behind taxonomic classification using Kraken2 (and Bracken), and see how to remove host reads and perform the quality checks (and filtering)....
