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Nextflow DSL2 tutorial

The problem

Andrea Telatin Andrea Telatin
01 Jan 2022

Microbiology from the Command Line

This website collects some notes, tutorials and handsout used for microbial bioinformatics training events.

Andrea Telatin Andrea Telatin
11 Jan 2018

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A very short bioinformatics tutorial using CLIMB notebooks

A very short bioinformatics tutorial using CLIMB notebooks

This walkthrough can be completely performed on any Linux terminal where Miniconda/Mamba have been installed, including a web based terminal offered by CLIMB BIG DATA new notebooks.

Andrea Telatin Andrea Telatin
10 Nov 2023
Python data structures (1)

Python data structures (1)

Built-in data structures in Python: lists, tuples, sets, and dictionaries.

Andrea Telatin Andrea Telatin
01 Mar 2023
Mounting CLIMB S3 buckets in a Linux Virtual Machine (VM)

Mounting CLIMB S3 buckets in a Linux Virtual Machine (VM)

The MRC CLIMB BIG DATA project offers modern storage in the form of S3 buckets, an object storage introduced by Amazon Web Services (AWS).

Andrea Telatin Andrea Telatin
01 Jan 2023
Get FASTQ reads from NCBI: an automated workflow

Get FASTQ reads from NCBI: an automated workflow

The problem

Andrea Telatin Andrea Telatin
12 Dec 2022
Word distribution, an example project for Python beginners

Word distribution, an example project for Python beginners

Counting the number of occurrences of each word in a text is a common task in computational linguistics. It is also a good example of how to use Python to...

Andrea Telatin Andrea Telatin
24 Oct 2022
Linux Command Line for Bioinformatics

Linux Command Line for Bioinformatics

A tutorial on the Linux command line (CLI) and its use in bioinformatics.

Andrea Telatin Andrea Telatin
02 Mar 2022