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Protein language models: from sequence to ecology

A walk through based on a lecture by Antrea Pavlou at the 11th EBAME workshop

Host removal with Deacon

If you’ve ever sequenced a clinical or environmental microbial sample, you’ve almost certainly encountered the problem of host contamination.

Logan: searching the sequence universe

Logan and Logan Search: making the world’s sequencing data searchable

Major Perl 5 versions

Perl has been the scripting language enabling the first bioinformatics radiation, for example “saving” the human genome project.

A very short bioinformatics tutorial using CLIMB notebooks

This walkthrough can be completely performed on any Linux terminal where Miniconda/Mamba have been installed, including a web based terminal offered by CLIMB BIG DATA new notebooks.

Python data structures (1)

Built-in data structures in Python: lists, tuples, sets, and dictionaries.