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Taxonomic profiling of whole metagenome shotgun

CLIMB Workshop on Metagenomics taxonomic profiling

16S Analysis with Qiime2

CLIMB Workshop on Metabarcoding (16S) analysis


Kaiju can be installed, as usual, from Conda. Like Kraken2, we have access to pre-built databases, and for this tutorial we used the nr 2021-02-24 (52 GB).

Join tabular files

When performing multiple operations on the same dataset, as some of you pointed out during the workshop, we often want to collate metadata. R is the ideal choice for doing...