Taxonomic profiling of whole metagenome shotgun
CLIMB Workshop on Metagenomics taxonomic profiling
| Date | What |
|---|---|
| 2021-07-05 | 9.30 Workshop: day 1 |
| Introduction, QC, Host removal, Kraken2 | |
| 2021-07-06 | 9.30 Workshop: day 2 |
| Bracken, merging results, visualizations | |
| 2021-07-07 | 9.30 Workshop: day 3 |
| Using R to analyse and visualize the output files |
Requisites
- Working knowledge of the Linux command line
- Ability to connect to a remote server via SSH
- Ability to transfer files via
scp(using WinSCP, CyberDuck or the command line) - RStudio 4.0 installed in your own computer
Programme
- Day1 - Introduction and preliminary aspects
- Day2 - Kraken2 and Bracken
- Day3 - Analyse your data in R