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Taxonomic profiling of whole metagenome shotgun (day 1)
On our first day we well cover the concepts behind taxonomic classification using Kraken2 (and Bracken), and see how to remove host reads and perform the quality checks (and filtering)....
Metabarcoding workshop (day 3)
From the Command line to R
Metabarcoding workshop (day 2)
Yesterday we introduced the whole workflow to analyze 16S reads, and the powerful framework that Qiime2 introduced that:
A primer on Dadaist2
What is Dadaist2
Metabarcoding workshop (day 1)
Before we start
Singularity for bioinformatics
A basic introduction to Singularity containers
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