Kaiju can be installed, as usual, from Conda.
Like Kraken2, we have access to pre-built databases, and for this
tutorial we used the nr 2021-02-24 (52 GB).
When performing multiple operations on the same dataset, as some of you pointed out during the workshop, we often want to collate metadata. R is the ideal choice for doing...
Today we will use Braken to recalibrate our estimations, and a set of scripts to merge multiple samples in a single table, and see how to filter it. We will...
