16S Analysis with Qiime2
CLIMB Workshop on Metabarcoding (16S) analysis
| Date | What |
|---|---|
| 2021-05-14 | 9.30 - 12.00 Workshop: day 1 |
| Introduction, QC, Denoising | |
| 2021-04-15 | 9.30 - 12.00 Workshop: day 2 |
| Core diversity, Handoff to PhyloSeq… | |
| 2021-04-16 | 9.30 - 11.00 Workshop: day 3 |
| Importing data in R |
Requisites
- Working knowledge of the Linux command line
- Ability to connect to a remote server via SSH
- Ability to transfer files via
scp(using WinSCP, CyberDuck or the command line) - RStudio 4.0 installed in your own computer. Basic usage useful.
Programme
- Day 1 - Introduction and denoising
- Day 2 - Core diversity analyses
- Day 3 - Analyse your data in R