Humann3

Humann 3 is not (yet) available from BioConda, but it's on a different channel.

To be used with the fill_template tool.

Bootstrap: docker
From: centos:centos7.6.1810


%environment
    source /opt/software/conda/bin/activate /opt/software/conda_env


%post
    yum -y install epel-release wget which nano curl zlib-devel
    yum -y groupinstall "Development Tools"

    mkdir -p /opt/software

    cd /opt/software
    curl -O https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh
    sh ./Miniconda3-latest-Linux-x86_64.sh -p /opt/software/conda -b

    /opt/software/conda/bin/conda config --add channels defaults
    /opt/software/conda/bin/conda config --add channels conda-forge
    /opt/software/conda/bin/conda config --add channels bioconda
    /opt/software/conda/bin/conda config --add channels biobakery
    /opt/software/conda/bin/conda create -p /opt/software/conda_env -y humann={version}
    source /opt/software/conda/bin/activate /opt/software/conda_env

    cd /opt/software

%runscript
    exec humann "$@"

  

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